User:Abdellatif Nemri/Notes

Copyediting

Conversion tool: tex2wiki

Equations in wikitext

Rq: \widetilde{oo}does not work in Scholarpedia

Articles

Bar code scanning

Anosov diffeomorphism

Differentially flat systems

Echolocation in bats --- Sensory maps --- Theory of localization of brain function

Walusinski O. Yawn. (2008), Scholarpedia, 3(6):6463	Wolfe J & Horowitz T S. Visual search. (2008), Scholarpedia, 3(7):3325.
Morris R.G.M. Morris water maze. (2008), Scholarpedia, 3(8):6315.	Llinas R. Neuron. (2008), Scholarpedia, 3(8):1490.
Pine J. Neurochip. (2008), Scholarpedia, 3(10):7766.	Ungerleider L.G. & Pessoa L. What and where pathways. (2008), Scholarpedia, 3(11):5342.
Todorovic D. Gestalt principles. (2008), Scholarpedia, 3(12):5345.	Shouval H. Maintenance of synaptic plasticity. (2009), Scholarpedia, 4(1):1606.
Calabrese A. Ocular dominance column. (2009), Scholarpedia, 4(3):2668.	Mattis D. Magnetism:_mathematical_aspects. (2010), Scholarpedia, 5(7):10316.
Gross G. Multielectrode array. (2011), Scholarpedia, 6(3):5749.

+ unofficially, Donald Olding Hebb, Pyramidal neuron, Binocular rivalry

Inserting figures that are not to be automatically numbered: Wikitable


Table 1 - Part of the specification for Code 39.

Inserting Pubmed links in a wikitext bibliography

Set up a bibliography format (Endnote, Sente or other ref managers) that outputs in the format:

* Zhang, J., Campbell, R.E., Ting, A.Y., and Tsien, R.Y. (2002) [http://www.ncbi.nlm.nih.gov/pubmed/12461557?dopt=Citation Creating new fluorescent probes for cell biology], ''Nat. Rev. Mol. Cell Biol.'', '''3''', 906-918.<br/>

The reference will look like:

Zhang, J., Campbell, R.E., Ting, A.Y., and Tsien, R.Y. (2002) Creating new fluorescent probes for cell biology, Nat. Rev. Mol. Cell Biol., 3, 906-918.

This is pretty straightforward as it just involves adding extra little bits of text such as [ and ''' here and there within the bibliography format. Both Sente and Endnote enable the URL to be included in the bibliography (tip from Robert Campbell).

In-text refs link to complete reference

Zu07 or any text serving as a link to the <label> associated to each reference.

References

<label>Zu07</label>Zumer J, Attias H, Sekihara K, Nagarajan S. (2007): A probabilistic algorithm integrating source localization and noise suppression for MEG and EEG data. NeuroImage 37:102-115.

(Source: Rey R. Ramirez, Source localization)

HTML edits

<span style="color:green"> word <span> = word (http://en.wikipedia.org/wiki/Web_colors)

Flash animations as figures: see Pinna illusion

Work In Progess

Tables

http://www.mediawiki.org/wiki/Help:Tables

http://www.w3.org/TR/REC-html40/struct/tables.html

Featured author column

Featured author column email

Dear Dr. XXX,

Thank you again for contributing "XXX" to Scholarpedia. As an Associate Editor of Scholarpedia, I am contacting you on behalf of Dr. Eugene M. Izhikevich regarding the following matter:

Scholarpedia has a weekly Featured Author column on its main page. http://www.scholarpedia.org/

You were selected to be one of the featured authors. As you can see on the main page, it consists of a short biography (significant positions, awards and honors, and field of research) with a picture.

If you agree with the general idea, there is some information that I need to write the column. Actually, I found most of it on your academic webpage except for: - a photo of good resolution - your date and place of birth

Approval of the biography by the featured author is an important part of the process. When I'm finished with writing the draft, I'll send you an email. You will then be able to read the draft directly on your userpage and make corrections if necessary.

Sincerely yours,

Abdellatif Nemri, Associate Editor of Scholarpedia.

abdellatif.nemri@scholarpedia.org

Suggestions

Pending: S, R, Spike correlation measures

Declined: Real time fMRI, prion, RNA

History of neuroscience Charles Gross (Princeton Dept of Psychology) cggross@princeton.edu http://www.acampbell.ukfsn.org/bookreviews/r/gross.html Maple Keith Geddes U of Waterloo kogeddes@uwaterloo.ca Pierre Legendre Statistical ecology

Jean-Pierre Changeux

"LabVIEW" National Instruments http://www.ni.com/

B.W. Char, K.O. Geddes, W.M. Gentleman, and G.H. Gonnet, "The design of Maple: A compact, portable, and powerful computer algebra system." Appears in Computer Algebra (Proceedings of EUROCAL '83), J. A. van Hulzen (ed.), Lecture Notes in Computer Science, No. 162, Springer-Verlag, Berlin, 1983, pp. 101-115.

Alzheimer's disease

LSD and Albert Hofmann

Robert W Cox RT fMRI rwcox@nih.gov first detailed report on an rtfMRI setup in 1995 from Weiskopf et al. 2007 Magnetic Resonance Imaging Volume 25, Issue 6, July 2007, Pages 989-1003

R.Christopher deCharms Real-time brain imaging (applications)

Anthony Zador Neural representation check with Anil Seth

color perception http://vision.psychol.cam.ac.uk/jdmollon/publications.html

Cell (Bruce Alberts, UCSF) Christian de Duve (Nobel 74) deduveicp.ucl.ac.be

Simple and complex cells (Bogdan Dreher, U Sydney)

Models of orientation selectivity (H. Sompolinski, Hebrew U of Jerusalem)

Dynamics of orientation tuning (V. Dragoi)

Models of primary visual cortex (already exists, but no potential authors yet)

Peter Lennie Spike energy

Psychoactive substances

Glia

Neurology

Parkinson (basal ganglia) Brain cancer (glia) Neurodegenerative diseases Multiple Sclerosis Huntington's chorea Encephalitis lethargica (Oliver Sachs) Meningitis Dyslexia Stroke Amyotrophic lateral sclerosis Addiction Depression Psychosis Agnosia Autism Tourette's syndrom Amnesia

Encyclopedia of Neuroscience

http://sfn.org/am2007/index.cfm?pagename=themes_topics#f

Chapter 1: Techniques in neuroscience

Electrophysiology

Neuroimaging

Staining, tracing...

Neural data analysis and statistics

Simulation Environments

GENESIS
LABVIEW

Molecular and genetic techniques

Chapter 2: Neuroanatomy and physiology

Chapter 3: Development

Brain patterning

Neurogenesis and gliogenesis

Stem cells

Axon and dendrite developement

Synaptogenesis and activity-dependant developement

Developmental cell death

Development of motor, sensory and limbic systems

Transplantation and regeneration

Evolution of developmental mechanisms

Chapter 4: Neural excitability, synapses and glia: cellular mechanisms

Neurotransmitters and signaling molecules

Ligand gated ion channels

G-protein linked receptors

Ion channels

transporters

Neurotransmitter release

Synaptic transmission

Synaptic plasticity

LTP, LTD, STDP...

Network interactions

Editor: Marc-Oliver Gewaltig

Signal propagation, oscillations and synchrony, reliability and spike timing

Intrinsic membrane properties

Neural oscillators, modulation of firing rate properties

Dendritic excitability and synaptic integration

Glia-neuron interactions

Chapter 5: Homeostatic and neuroendocrine systems

Neuroendocrine

Cardiovascular Regulation

Respiratory Regulation

Thermoregulation

Gastrointestinal and Urogenital Regulation

Stress and the Brain

Regulation of Food Intake and Body Weight

Biological Rhythms and Sleep

Brain Blood Flow, Metabolism, and Homeostasis

Chapter 6: Sensory and motor systems

Chemical senses

Editor: Maxim Bazhenov

Olfaction, taste

Audition

Vision

Multisensory

Visuomotor processing

Eye movement

Vestibular

Pain

Tactile/somatosensory

Spinal cord injury and plasticity

Rhythm and Pattern Generating Circuits: Vertebrates and Invertebrates

Kinematics and EMG

Reflexes...

Motor Neurons and Muscle

Cerebellum

Basal Ganglia

Posture

Voluntary Movements

Brain-Machine Interface

Comparative Anatomy and Evolution

Chapter 7: Cognition and behavior

Human cognition and behavior

Perception, learning, memory, attention, language, emotion, decision making...

Animal cognition and behavior

Attention, learning and memory, stress...

Motivation and emotion

Sexual behavior, parental behavior, reward, defensive behavior and agression...

Neuroethology

Chapter 8: Consciousness ==

Editor: Anil K. Seth

Chapter 9: Disorders of the nervous system

Neurodegenerative disorders and movement disorders

Alzheimer's, Parkinson's...

Aging

Developmental disorders

Epilepsy

Ischemia

Demyelinating disorders

Multiple sclerosis,...

Neuromuscular diseases

Trauma

Neurotoxicity, Inflammation, and Neuroprotection

Neuro-Oncology

Sensory Disorders

Gene Therapy

Cognitive, Emotional, and Behavioral State Disorders

Schizophrenia, autism, affective disorders, ADD

Addiction and Drugs of Abuse

Behavioral Pharmacology

Chapter 10: History of neuroscience

History of concepts and biographies